Upload MNP output files such as "../predictBrain_v12.8/200788260036_R02C01_scores_cal.csv".

sentrix_id A_IDH[_LG] A_IDH_HG CGC ,Study,CGC_groups,log_AIDH_cal_ratio,CDKN2AB_del 1,CATNON,CGC_medium,-0.71335607391659,FALSE 2,CATNON,CGC_high,9.04758142035417,FALSE 3,CATNON,CGC_medium,1.53496793861302,FALSE 4,CATNON,CGC_low,-10.9033511949646,FALSE 5,CATNON,CGC_low,-4.73287677518686,FALSE 6,CATNON,CGC_low,-11.4977115018843,FALSE 7,CATNON,CGC_low,-5.82788678582374,FALSE 8,CATNON,CGC_medium,-1.26949787580823,FALSE 9,CATNON,CGC_low,-6.44056006252046,FALSE 10,CATNON,CGC_medium,0.493744844867872,FALSE 11,CATNON,CGC_low,-5.9167237561318,FALSE 12,CATNON,CGC_low,-9.24217034634426,FALSE 13,CATNON,CGC_low,-10.2320438499003,FALSE 14,CATNON,CGC_low,-8.38574726005137,FALSE 15,CATNON,CGC_low,-9.88802475188791,TRUE 16,CATNON,CGC_low,-5.58961606941128,FALSE 17,CATNON,CGC_low,-10.36641314256,FALSE 18,CATNON,CGC_low,-11.6253763448717,FALSE 19,CATNON,CGC_low,-12.8348510302747,FALSE 20,CATNON,CGC_low,-10.3974990211182,FALSE 21,CATNON,CGC_medium,2.57829580303201,TRUE 22,CATNON,CGC_medium,-1.31971677914159,FALSE 23,CATNON,CGC_low,-6.33075969776853,FALSE 24,CATNON,CGC_low,-13.1742898642011,FALSE 25,CATNON,CGC_high,6.16866525332047,FALSE 26,CATNON,CGC_low,-5.63970883833929,FALSE 27,CATNON,CGC_low,-4.78121019886975,FALSE 28,CATNON,CGC_medium,3.02932299890994,FALSE 29,CATNON,CGC_medium,-4.19755454267884,TRUE 30,CATNON,CGC_medium,-3.02420708963065,FALSE 31,CATNON,CGC_low,-8.46300138859358,FALSE 32,CATNON,CGC_low,-5.64047604369653,FALSE 33,CATNON,CGC_medium,-0.569683059766961,TRUE 34,CATNON,CGC_medium,-2.08289514285509,FALSE 35,CATNON,CGC_low,-9.85811780553387,TRUE 36,CATNON,CGC_medium,-2.63073281545594,FALSE 37,CATNON,CGC_low,-5.46175589153704,FALSE 38,CATNON,CGC_low,-7.89993029468126,FALSE 39,CATNON,CGC_low,-10.8462484789589,FALSE 40,CATNON,CGC_low,-6.47034442583529,TRUE 41,CATNON,CGC_low,-10.9830450671867,FALSE 42,CATNON,CGC_low,-9.00431962595312,FALSE 43,CATNON,CGC_low,-5.69827560632461,FALSE 44,CATNON,CGC_low,-6.77380892191165,FALSE 45,CATNON,CGC_medium,0.0663656276367449,FALSE 46,CATNON,CGC_low,-8.18281427155325,FALSE 47,CATNON,CGC_medium,-2.41058369850411,FALSE 48,CATNON,CGC_low,-4.54064295202261,FALSE 49,CATNON,CGC_low,-9.593672054324,FALSE 50,CATNON,CGC_low,-10.7531462051906,FALSE 51,CATNON,CGC_low,-11.1258887264448,FALSE 52,CATNON,CGC_medium,-2.75983245831744,FALSE 53,CATNON,CGC_medium,0.125462286834866,FALSE 54,CATNON,CGC_medium,-2.24173482145865,FALSE 55,CATNON,CGC_low,-7.96757838835048,FALSE 56,CATNON,CGC_medium,-0.0634964462560864,FALSE 57,CATNON,CGC_high,7.59417555645759,FALSE 58,CATNON,CGC_low,-4.76000304159729,FALSE 59,CATNON,CGC_low,-7.86694974761631,FALSE 60,CATNON,CGC_low,-6.23164645877916,FALSE 61,CATNON,CGC_medium,0.990664042176246,FALSE 62,CATNON,CGC_low,-7.53758851523848,FALSE 63,CATNON,CGC_low,-4.99343818787527,FALSE 64,CATNON,CGC_low,-7.37489217394561,FALSE 65,CATNON,CGC_medium,-4.37320843396424,TRUE 66,CATNON,CGC_high,16.0657380839562,TRUE 67,CATNON,CGC_low,-6.83189757693802,FALSE 68,CATNON,CGC_medium,-1.80642256531696,TRUE 69,CATNON,CGC_high,8.10549249157441,TRUE 70,CATNON,CGC_high,4.58581685906359,FALSE 71,CATNON,CGC_high,8.29231567038617,TRUE 72,CATNON,CGC_low,-8.21397029449522,FALSE 73,CATNON,CGC_low,-10.1156969248943,FALSE 74,CATNON,CGC_medium,1.21077925213932,TRUE 75,CATNON,CGC_medium,-0.316808565913788,FALSE 76,CATNON,CGC_low,-7.96026364594422,FALSE 77,CATNON,CGC_low,-7.90900003584131,FALSE 78,CATNON,CGC_low,-4.60334285762926,FALSE 79,CATNON,CGC_low,-11.7255650171489,FALSE 80,CATNON,CGC_low,-8.55428073111783,FALSE 81,CATNON,CGC_high,9.98449203726266,FALSE 82,CATNON,CGC_medium,3.99157943528534,FALSE 83,CATNON,CGC_medium,0.636527907037437,FALSE 84,CATNON,CGC_low,-6.36452528369154,FALSE 85,CATNON,CGC_high,5.08820632437085,FALSE 86,CATNON,CGC_low,-12.0597013990672,FALSE 87,CATNON,CGC_high,12.1139268459517,TRUE 88,CATNON,CGC_low,-8.25517993423914,FALSE 89,CATNON,CGC_low,-4.97420994860059,FALSE 90,CATNON,CGC_low,-6.07632176586431,FALSE 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158,CATNON,CGC_medium,-1.92713941884806,FALSE 159,CATNON,CGC_low,-11.7699411717681,FALSE 160,CATNON,CGC_low,-12.2101393640355,FALSE 161,CATNON,CGC_medium,3.02030392325015,FALSE 162,CATNON,CGC_low,-7.47617161291179,FALSE 163,CATNON,CGC_low,-7.40459490199322,FALSE 164,CATNON,CGC_low,-10.7506342959542,FALSE 165,CATNON,CGC_low,-8.42044717849694,FALSE 166,CATNON,CGC_low,-7.37000777728657,FALSE 167,CATNON,CGC_medium,-3.75450867776357,FALSE 168,CATNON,CGC_low,-9.22502244977632,FALSE 169,CATNON,CGC_medium,3.73358757160795,FALSE 170,CATNON,CGC_low,-6.26701668035162,FALSE 171,CATNON,CGC_low,-13.474579066746,FALSE 172,CATNON,CGC_high,10.9822736035768,TRUE 173,CATNON,CGC_low,-11.871371468919,FALSE 174,CATNON,CGC_low,-8.3407022714609,FALSE 175,CATNON,CGC_low,-5.0525528553286,FALSE 176,CATNON,CGC_medium,-0.371129010854297,FALSE 177,CATNON,CGC_low,-10.756177452921,FALSE 178,CATNON,CGC_low,-8.01290204095879,FALSE 179,CATNON,CGC_high,13.0043686670067,FALSE 180,CATNON,CGC_low,-11.6285013766396,FALSE 181,CATNON,CGC_medium,-2.44897987601613,FALSE 182,CATNON,CGC_low,-9.32462604036979,FALSE 183,CATNON,CGC_low,-8.30732487319039,FALSE 184,CATNON,CGC_high,11.5692244662351,FALSE 185,CATNON,CGC_high,14.8501751339116,FALSE 186,CATNON,CGC_low,-5.28583974459649,FALSE 187,CATNON,CGC_low,-4.50475935643971,FALSE 188,CATNON,CGC_medium,0.840192091589303,FALSE 189,CATNON,CGC_high,12.6365295209422,FALSE 190,CATNON,CGC_medium,2.89723719979217,FALSE 191,CATNON,CGC_low,-9.38767271499873,FALSE 192,CATNON,CGC_low,-9.57919904506777,FALSE 193,CATNON,CGC_low,-6.88872152603582,FALSE 194,CATNON,CGC_low,-8.02545008825233,TRUE 195,CATNON,CGC_medium,-0.42056955348875,FALSE 196,CATNON,CGC_medium,-2.05053971959859,FALSE 197,CATNON,CGC_low,-5.4804152101441,FALSE 198,CATNON,CGC_low,-9.14167443613213,FALSE 199,CATNON,CGC_high,9.76012035996759,TRUE 200,CATNON,CGC_high,5.09075768460652,TRUE 201,CATNON,CGC_low,-6.39883345715247,FALSE 202,CATNON,CGC_medium,-3.65327796564326,FALSE 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R code to run CGC^ψ can be found here: https://github.com/ErasmusMC-Neuro-Oncology/Continuous_Grading_Classifier/blob/main/CGC-Psi.R